rs12248560 in CYP2C19

Clinical Annotations

PharmGKB clinical annotations provide information about variant-drug pairs based on a summary of the individual variant annotations in the database. Therefore, each clinical annotation could represent information from a single paper or multiple papers. The rating system used to assign "Strength of Evidence" levels is described here. The individual variant annotations, including the PMID for each supporting PubMed publication, can be found on the "PGx Research" tab above.

This information is manually curated by PharmGKB. All alleles are displayed on the positive chromosomal strand.

PharmGKB variant annotations provide information about variant-drug pairs or variant-disease pairs based on individual PubMed publications. Each annotation represents information from a single paper and the goal is to report the information that the author states, not an interpretation of the paper. The PMID for supporting PubMed publications is found in the "Evidence" field.

Information presented, including study size, allele frequencies and statistics is taken directly from the publication. However, if the author does not correct p-values in cases of multiple hypotheses, curators may apply a Bonferroni correction. Curators attempt to report study size based on the actual number of participants used for the calculation of the association statistics, so the number may vary slightly from what is reported in the abstract of the paper. OMB Race Category information is derived from the paper and mapped to standardized categories. Category definitions may be found by clicking on the "OMB Race Category" link.

List of all variant annotations for this variant.

Variant Overview

VIP Variant in CYP2C19

rs12248560 (c.-806C>T) is the defining polymorphism of the CYP2C19*17 allele and is a C>T transition in the promoter that creates a consensus binding site for the GATA transcription factor family, resulting in increased CYP2C19 expression and activity [Articles:16413245, 17625515, 20083681]. The CYP2C19*17 allele frequencies are approximately 21% in Caucasians, 16% in African-Americans, and 3% in Asians [Article:21716271]. See also CYP2C19*17 haplotype page.

Citation	PharmGKB summary: very important pharmacogene information for cytochrome P450, family 2, subfamily C, polypeptide 19. Pharmacogenetics and genomics. 2011. Scott Stuart A, Sangkuhl Katrin, Shuldiner Alan R, Hulot Jean-Sébastien, Thorn Caroline F, Altman Russ B, Klein Teri E.
Reviewed	09/12/2011
Key Publications:
Drugs / Other Molecules	Drug Substrate (25) amitriptyline carisoprodol citalopram clomipramine clopidogrel cyclophosphamide hexobarbital imipramine indomethacin lansoprazole mephenytoin methylphenobarbital moclobemide nelfinavir omeprazole pantoprazole phenobarbital phenytoin primidone progesterone proguanil propranolol rabeprazole teniposide warfarin

Related Publications

Evidence	Publication
CA VA	Impact of the CYP2C19*17 Allele on the Pharmacokinetics of Omeprazole and Pantoprazole in Children: Evidence for a Differential Effect. Drug metabolism and disposition: the biological fate of chemicals. 2010. Kearns Gregory L, et al.
CA	Increased omeprazole metabolism in carriers of the CYP2C19*17 allele; a pharmacokinetic study in healthy volunteers. British journal of clinical pharmacology. 2008. Baldwin R Michael, et al.
CA	A common novel CYP2C19 gene variant causes ultrarapid drug metabolism relevant for the drug response to proton pump inhibitors and antidepressants. Clinical pharmacology and therapeutics. 2006. Sim Sarah C, et al.

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