Pathway Bisphosphonate Pathway, Pharmacodynamics

Representation of genes involved in bisphosphonates' effects in osteoclasts.
Bisphosphonate Pathway, Pharmacodynamics
hmgcs1 hmgcr col1a1 col1a2 fdps fdft1 sqle ras vdr esr2 lrp5 il1b rhoa rac cdc42 rab1a rap1a n-bisph
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Bisphosphonates are potent inhibitors of osteoclast-mediated bone resorption. They are widely used in the management of osteoporosis and other diseases of high bone turnover [Article:18775204]. Bisphosphonates' pronounced affinity for bone, but not other tissues, makes them the ideal candidates for treatment of bone diseases. Bisphosphonates have been shown to increase bone mineral density (BMD), reduce bone turnover markers, and reduce the risk of osteoporotic fractures. They are currently the most important and effective class of drugs for metabolic bone disorders such as osteoporosis, Paget's disease, and osteogenesis imperfecta [Articles:15515572, 18775204, 18843680]. Intravenous bisphosphonates are also used in the treatment of malignant hypercalcemia, osteogenesis imperfecta and prevention of skeletal-related events (SREs) in patients with multiple myeloma or breast and prostate cancers [Articles:9753709, 12548584, 12874704, 15515572, 18504149].

Chemically, bisphosphonates are synthetic analogs of pyrophosphate, an endogenous regulator of bone mineralization which contains a non-hydrolysable P-C-P backbone with two side chains (R1 and R2) [Article:15932344]. The two phosphonate groups are required for both binding to bone mineral and for anti-resorptive potency. Modification to one or both phosphonate groups significantly reduced the binding affinity as well as the anti-resorptive potency of bisphosphonates [Article:18056045]. The R1 and R2 side chains are responsible for a wide range of activities. Acting together with the two phosphonate groups, the presence of a hydroxyl group (-OH) or an amino group (-NH2) rather than an H group in the R1 chain enhances binding to calcium minerals. The presence of a nitrogen or amino group in the R2 side chain significantly increases the anti-resorptive potency of bisphosphonates and also affects binding to hydroxyapatite (HAP) [Articles:16831938, 18056045, 18214569].

Bisphosphonates can be broadly classified into two major classes with distinct mechanisms of action: the non-nitrogen containing class and the nitrogen-containing class. The earlier non-nitrogen containing bisphosphonates (e.g., clodronate, tiludronate and etidronate) act by incorporation into ATP, whereas the newer, more potent nitrogen-containing bisphosphonates (N-BPs, e.g., pamidronate, alendronate, ibandronate, riserdronate and zoledronate) act by inhibiting farnesyl pyrophosphate synthase (FDPS) in the mevalonate pathway. [Article:16650801].


Pharmacokinetic studies showed that all bisphosphonates have high affinity for bone mineral and poor intestinal absorption [Article:17959891]. The amount of bisphosphonates taken up by the skeleton depends on several factors including renal function, rate of bone turnover and on the affinity for bone mineral. The skeleton has a high capacity to retain bisphosphonates and the major route of elimination is through kidney [Article:15932344]. Renal transporters for bisphosphonates have not been elucidated. Potential candidate transporters for bisphosphonates are the sulphate transporters and phosphate transporters that belong to SLC22A, SLC17A and SLC13A families [Articles:9399997, 12811560].

The two classes of bisphosphonates are metabolized differently. The simple, non-nitrogen-containing bisphosphonates are metabolized to cytotoxic, non-hydrolysable analogs of ATP [Articles:9286751, 11961144]. Accumulation of these toxic by-products interferes with mitochondrial function and ultimately leads to apoptosis of osteoclasts. However, the more potent nitrogen-containing bisphosphonates are not metabolized and are excreted unchanged via the kidney. Bisphosphonates are typically given when fasting, as food reduces the bioavailability of oral nitrogen-containing bisphosphonates [Article:10384857].


Bisphosphonates preferentially bind to the surface of bone at sites of active remodeling and become internalized into osteoclasts via endocytosis [Article:16501031]. Two distinct mechanisms of action have been revealed. The non-nitrogen containing bisphosphonates inhibit bone resorption by generating the cytotoxic analogs of ATP which interfere with mitochondrial function and induce apoptosis of osteoclasts [Articles:9286751, 11961144]. In contrast, the more potent nitrogen-containing bisphosphonates bind to and inhibit key enzymes of the intracellular mevalonate pathway, thereby preventing the prenylation and activation of small GTPases that are essential for the bone-resorbing activity and survival of osteoclasts [Articles:12243249, 12590887, 17518363, 18775204]. The mevalonate pathway is a biosynthetic pathway responsible for production of cholesterol, other sterols and isoprenoid lipids [Article:9556058]. Some of these isoprenoid lipids (e.g. farnesyl pyrophosphate (FPP) and geranyl-geranyl pyrophosphosphate (GGPP)) are essential for the prenylation and activation of the small GTPases such as Ras, Rho, Rac, Rab and Cdc42 [Articles:9797474, 9556058, 11160603]. The small GTPases are important signaling proteins regulating osteoclast morphology, cytoskeleton arrangement, membrane ruffling, trafficking and cell survival [Articles:10934645, 12370802]. Inhibition of enzymes along the mevalonate pathway may impair the prenylation process and lead to loss of function of the small GTPases. Several enzymes along the mevalonate pathpaway have been studied as potential molecular targets for nitrogen-containing bisphosphonates. Earlier studies showed that incadronate and ibandronate, but not other bisphosphonates, are inhibitors for squalene synthase (FDFT1), an enzyme required for cholesterol biosynthesis in the mevalonate pathway. Inhibition of FDFT1, however, does not lead to loss of protein prenylation [Articles:1464749, 9125274], suggesting that other enzymes upstream in the pathway may be inhibited by N-BPs. The main target protein of the N-BPs is currently considered to be farnesyl diphosphate synthase (FDPS), a key regulatory enzyme catalyzing the production of isoprenoid lipids. Multiple studies demonstrated that FDPS is inhibited by all the N-BPs and the anti-resorptive potency of various N-BPs correlates with their ability to inhibit FDPS [Articles:9797474, 9556058, 11160603]. X-ray crystallography study also confirmed that the potent N-bisphosphonates (risedronate and zoledronate respectively) bind and inhibit the active site of FDPS via the nitrogen atoms [Article:16684881]. Inhibition of FDPS by N-BP blocks the synthesis of FPP and GGPP, which in turn prevents prenylation of small GTPases and disrupts normal osteoclast function. These studies clearly indicate that inhibition of FDPS is a central mechanism by which N-BPs inhibit bone resorption.

Bisphosphonates are currently the most widely used and effective antiresorptive therapy for osteoporosis. They are well tolerated by most, however, the efficacy and safety of bisphosphonates vary among patients [Article:19187808]. It is estimated that around 5-10% patients fail to respond to bisphosphonate therapy [Articles:15956844, 16675890]. In addition, some patients with intravenous bisphosphonate treatment experienced adverse events such as atrial fibrillation [Articles:17476007, 17476024], acute phase response [Articles:3124942, 8833207, 9351880], renal insufficiency and osteonecrosis of the jaw [Articles:16243172, 16481822]. Despite the large amount of genetic evidence elucidated for the susceptibility to osteoporosis, the understanding about genetic factors contributing to osteoporosis treatment response is still limited. The majority of published pharmacogenetic studies for bisphonsphonate response to date have focused on candidate genes related to bone mineral density (BMD), bone turnover and osteoporotic fracture risk [Articles:16550715, 15932344, 18518851, 18971675, 19271099]. These include the vitamin D receptor gene (VDR), the estrogen receptor beta gene (ESR2), the type 1 collagen gene (COL1A1, and COL1A2) and the low density lipoprotein receptor-related protein 5 gene (LRP5). Common polymorphic variation in the VDR gene (BsmI genotype, rs1544410) has been reported to contribute to individual response to etidronate [Article:10692979] and alendronate [Articles:12608943, 15739035] in Caucasian postmenopausal women, with the bb genotype associated with lower increase in BMD after bisphosphonate treatment. It has also been observed that the BsmI (rs1544410) and TaqI (rs731236) polymorphisms of VDR and -511 C/T polymorphism (rs16944) of IL1B were significantly associated with acquired resistance to bisphosphonate treatment in Caucasian patients with Paget's disease of the bone [Articles:16257277, 19020788]. The COL1A1 Sp1 polymorphism (rs1800012) has been associated with decrease in bone mass and osteoporotic fractures. The SS genotype of this polymorphism was associated with a better response to etidronate treatment in terms of femoral neck BMD but not lumbar spine BMD, indicating site-specific BMD response influenced by COL1A1 genotype to cyclical etidronate therapy [Article:11907712]. Variations in ESR2 (RsaI) and LRP5 (rs3736228 and rs4988321) were also evaluated for their influence on response to alendronate and risedronate respectively, however, no association was found [Articles:12137804, 19148563]. Since bisphosphonates modulate the mevalonate pathway, polymorphisms in genes encoding target enzymes of the mevalonate pathway may modulate the response to N-bisphosphonate treatments. Marini et al. has demonstrated that a polyphorphism in FDPS, a target of N-bisphosphonates, impacted the response to long-term N-bisphosphonate treatment in Danish postmenopausal women [Article:18687167]. Patients with the CC genotype for rs2297480 showed a decreased response of bone turnover markers to N-bisphosphonate therapy. Moreover, a recent genome-wide association study identified a polymorphism of CYP2C8 (rs1934951) to be associated with bisphosphonate-related osteonecrosis of the jaw (ONJ) [Article:18594024]. Individuals homozygous for the T allele showed an increased risk for developing ONJ. Results from all the studies described above highlight the possibility of using genetic testing to tailor bisphosphonate treatments for optimal response. However, further population analysis involving larger patient cohorts, different ethnic backgrounds and examining all functional gene variants simultaneously is required to validate the existing findings and to fully elucidate the mechanisms underlying the variation in the treatment response to bisphosphonates.

Authors: Li Gong, Russ B. Altman, Teri E. Klein.
Gong Li, Altman Russ B, Klein Teri E . "Bisphosphonates pathway" Pharmacogenetics and genomics (2011).
Therapeutic Categories:
  • Musculoskeletal agents

Entities in the Pathway

Genes (17)

Relationships in the Pathway

Arrow FromArrow ToControllersPMID
acetoacetyl-CoA, acetyl-CoA HMG-CoA HMGCS1 17467679
farnesyl pyrophosphate geranyl-geranyl pyrophosphate
farnesyl pyrophosphate squalene FDFT1 17467679
FDFT1 FDFT1 1464749, 9125274
FDPS FDPS 11160603, 16684881, 18687167, 9556058, 9797474
geranyl pyrophosphate farnesyl pyrophosphate FDPS 17467679
HMG-CoA mevalonate HMGCR 17467679
mevalonate geranyl pyrophosphate
CDC42, HRAS, KRAS, MRAS, NRAS, RAB1A, RAC1, RAC2, RAC3, RAP1A, RHOA, RRAS CDC42, HRAS, KRAS, MRAS, NRAS, RAB1A, RAC1, RAC2, RAC3, RAP1A, RHOA, RRAS geranyl-geranyl pyrophosphate 11160603, 9556058, 9797474
squalene cholesterol SQLE 17467679

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