Variant Annotations
PharmGKB variant annotations provide information about variant-drug pairs based on individual PubMed publications. Each annotation represents information from a single paper and the goal is to report the information that the author states, not an interpretation of the paper. The PMID for supporting PubMed publications is found in the "Evidence" field.
Information presented, including study size, allele frequencies and statistics is taken directly from the publication. However, if the author does not correct p-values in cases of multiple hypotheses, curators may apply a Bonferroni correction. Curators attempt to report study size based on the actual number of participants used for the calculation of the association statistics, so the number may vary slightly from what is reported in the abstract of the paper. OMB Race Category information is derived from the paper and mapped to standardized categories. Category definitions may be found by clicking on the "OMB Race Category" link.
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VIP Variant in CYP3A4
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Appendix
| Genomic Variant & GenBank ID: | 85,273 C>T on AF280107 |
|---|---|
| mRNA Variant & GenBank ID: | 1503 C>T on NM_017460 |
| Protein Variant & GenBank ID: | 467 Pro>Ser on NP_059488 |
| Key Haplotypes: | CYP3A4*19 |
Publications related to rs4986913 at chr7:99358459: 1
| Recombinant CYP3A4*17 is defective in metabolizing the hypertensive drug nifedipine, and the CYP3A4*17 allele may occur on the same chromosome as CYP3A5*3, representing a new putative defective CYP3A haplotype. The Journal of pharmacology and experimental therapeutics. 2005. Lee Su-Jun, et al. [Article:15634941@PubMed] |
Cross-References
- UCSC Golden Path:
- chr7:99358459
- dbSNP:
- rs4986913
- HapMap:
- rs4986913
- LS-SNP:
- rs4986913
Platform Availability
- Illumina