Gene:
UGT1A1
UDP glucuronosyltransferase 1 family, polypeptide A1

Dutch Pharmacogenetics Working Group Guideline - irinotecan, UGT1A1

The Royal Dutch Pharmacists Association - Pharmacogenetics Working Group has evaluated therapeutic dose recommendations for irinotecan based on UGT1A1 genotype (PMID:21412232). They recommend reducing the dose for *28 homozygous patients receiving more than 250 mg/m^2.

Phenotype (Genotype) Therapeutic Dose Recommendation Level of Evidence Clinical Relevance
*1/*28 None. Published controlled studies of moderate quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints.. Clinical effect (S): death; arrhythmia; unanticipated myelosuppression.
*28/*28 Dose >250mg/m^2: reduce initial dose by 30%. Increase dose in response to neutrophil count. Dose <=250mg/m^2: no dose adjustment. Published controlled studies of moderate quality* relating to phenotyped and/or genotyped patients or healthy volunteers, and having relevant pharmacokinetic or clinical endpoints. Clinical effect (S): Failure of lifesaving therapy e.g. anticipated myelosuppression; prevention of breast cancer relapse; arrhythmia; neutropenia < 0.5x10^9/l; leucopenia < 1.0x10^9/l; thrombocytopenia < 25x10^9/l; life-threatening complications from diarrhea.

Information regarding PGx on FDA drug labels is derived from the FDA's Table of Pharmacogenomic Biomarkers in Drug Labels. Excerpts from the label and downloadable highlighted label PDFs are manually curated by PharmGKB

FDA Label - irinotecan, UGT1A1

The FDA recommends, but does not require, genetic testing prior to initiating treatment with irinotecan.

Excerpt from the irinotecan drug label:

Individuals who are homozygous for the UGT1a1*28 allele (UGT1A1 7/7 genotype) are at increased risk for neutropenia following initiation of CAMPTOSAR treatment...When administered in combination with other agents, or as a single-agent, a reduction in the starting dose by at least one level of CAMPTOSAR should be considered for patients known to be homozygous for the UGT1A1*28 allele.

Patients homozygous for the UGT1A1*28 allele, a genetic polymorphism present in approximately 10% of the North American population that leads to reduced UGT1A1 enzyme activity, are at increased risk for neutropenia resulting from treatment with irinotecan. Individuals heterozygous for the UGT1A1 allele may be at increased risk for neutropenia. UGT1A1 catalyzes the conjugation of the highly active irinotecan metabolite SN-38 to the less-active SN-38 glucuronide.

For the complete drug label text with sections containing pharmacogenetic information highlighted, see the irinotecan drug label, updated on 5/2010 to include more studies supporting the association of UGT1A1*28 and neutropenia risk and information about laboratory testing of UGT1A1.

FDA Label - Nilotinib, UGT1A1

Nilotinib is indicated by the FDA for use in patients diagnosed with Philadelphia chromosome positive chronic myeloid leukemia.

Excerpts from the nilotinib drug label:

"Treatment of newly diagnosed adult patients with Philadelphia chromosome positive chronic myeloid leukemia (Ph+ CML) in chronic phase. The study is ongoing and further data will be required to determine long-term outcome. (1.1) Treatment of chronic phase (CP) and accelerated phase (AP) Ph+ CML in adult patients resistant to or intolerant to prior therapy that included imatinib. (1.2)"

"Mechanism of Action Nilotinib is an inhibitor of the Bcr-Abl kinase. Nilotinib binds to and stabilizes the inactive conformation of the kinase domain of Abl protein. In vitro, nilotinib inhibited Bcr-Abl mediated proliferation of murine leukemic cell lines and human cell lines derived from patients with Ph+ CML."

SUMMARY
Nilotinib is indicated for the treatment of chronic myeloid leukemia diagnosed as Philadelphia chromosome positive. The drug label includes recommended dosing guidelines for newly diagnosed individuals and for those resistant or intolerant to previous treatments.

The FDA recommends, but does not require, genetic testing for UGT1A1 variants prior to initiating or reinitiating treatment with nilotinib.

Excerpt from the nilotinib drug label:

"Tasigna can increase bilirubin levels. A pharmacogenetic analysis of 97 patients evaluated the polymorphisms of UGT1A1 and its potential association with hyperbilirubinemia during Tasigna treatment. In this study, the (TA)7/(TA)7 genotype was associated with a statistically significant increase in the risk of hyperbilirubinemia relative to the (TA)6/(TA)6 and (TA)6/(TA)7 genotypes. However, the largest increases in bilirubin were observed in the (TA)7/(TA)7 genotype (UGT1A1*28) patients (see Warnings and Precautions (5.5))."

SUMMARY
Nilotinib is an inhibitor of UGT1A1 in vitro, and individuals with the UGT1A1*28 genotype (TA)7/(TA)7 (rs8175347) are at an increased risk of hyperbilirubinemia when taking nilotinib. The drug can also inhibit ABCB1, and can inhibit or induce numerous CYP enzymes, thus may affect the pharmacokinetics of drugs taken concomitantly (as discussed in section 7.1). The label also indictates that CYP3A4 inhibitors or inducers should be avoided when taking nilotinib due to the possible effect on nilotinib pharmacokinetics and efficacy.

For the complete drug label text with sections containing this pharmacogenetic information highlighted, see the Nilotinib drug label.

*Disclaimer: The contents of this page have not been endorsed by the FDA and are the sole responsibility of PharmGKB.

PharmGKB contains no clinical annotations for this gene. To report clinical variants, click here.

A non-comprehensive list of genetic tests for specific variants, including descriptions of and links to individual tests; manually curated by PharmGKB. The information listed is provided for educational purposes only and does not constitute an endorsement of any listed test or manufacturer.

PGx Test Variants Assayed Related Drugs?
Invader UGT1A1 Molecular Assay UGT1A1*28
UGT1A1 (Camptosar/Irinotecan) GenotypR UGT1A1*28

The table below contains information about pharmacogenomic variants on PharmGKB. Please follow the link in the "Variant" column for more information about a particular variant. Each link in the "Variant" column leads to the corresponding PharmGKB Variant Page. The Variant Page contains summary data, including PharmGKB manually curated information about variant-drug pairs based on individual PubMed publications. The PMIDs for these PubMed publications can be found on the Variant Page.

The tags in the first column of the table indicate what type of information can be found on the corresponding Variant Page.

Links in the "Drugs" column lead to PharmGKB Drug Pages.

Variant?
(build 132)
Alternate Names ? Drugs ? Alleles ? Function ? Amino Acid?
Translation
rs10929302 UGT1A1*93, UGT1A1:-3156G>A, UGT1A1:G-3156A, c.61-9898G>A, c.856-9898G>A, c.862-9898G>A, c.868-9898G>A, g.172393G>A, g.1864G>A, g.612041G>A A/G Not Available
No VIP available No Clinical Annotations available VA
rs34993780 T > G Missense Tyr487Asp
rs35350960 UGT1A1*27, UGT1A1:Pro229Glu, c.61-6061C>A, c.686C>A, c.856-6061C>A, c.862-6061C>A, c.868-6061C>A, g.176230C>A, g.234334358C>A, g.5701C>A, g.615878C>A, p.Pro229Gln A/C Not Available
rs4124874 UGT1A1*60, UGT1A1:-3263T>G, UGT1A1:-3279T>G, c.61-10021T>G, c.856-10021T>G, c.862-10021T>G, c.868-10021T>G, g.172270T>G, g.1741T>G, g.611918T>G T/G Not Available
rs4148323 UGT1A1*6, UGT1A1: G71R, UGT1A1:211G>A, UGT1A1:G211A, UGT1A1:Gly71Arg, c.211G>A, c.61-6536G>A, c.856-6536G>A, c.862-6536G>A, c.868-6536G>A, g.175755G>A, g.234333883G>A, g.5226G>A, g.615403G>A, p.Gly71Arg A/G Not Available
No VIP available No Clinical Annotations available VA
rs72551344 T > G Not Available Leu233Arg
rs8175347 7, 7-TA insertion in promoter, TA, UGT1A1*28, microsatellite, short tandem repeat (TA)5/6/7/8 Not Available
Alleles, Functions, and Amino Acid Translations are all sourced from dbSNP build 132

Overview

Alternate Names:  OTTHUMP00000065199; UDP glucuronosyltransferase 1A1; UDP glycosyltransferase 1 family, polypeptide A1; UDP-glucuronosyltransferase 1-1; UDP-glucuronosyltransferase 1-A; UDP-glucuronosyltransferase 1A1; UGT-1A; UGT1-01; UGT1.1; bilirubin UDP-glucuronosyltransferase 1-1; bilirubin UDP-glucuronosyltransferase isozyme 1; bilirubin-specific UDPGT isozyme 1
Alternate Symbols:  BILIQTL1; GNT1; HUG-BR1; UDPGT; UDPGT 1-1; UGT1; UGT1*1; UGT1A; UGT1A5
Haplotypes: UGT1A1*1L IA; UGT1A1*1a; UGT1A1*1a IA; UGT1A1*1a WILDTYPE; UGT1A1*1b; UGT1A1*1b IB; UGT1A1*1c IB; UGT1A1*1d IA; UGT1A1*1e IA; UGT1A1*1f IA; UGT1A1*1g IA; UGT1A1*1h IA; UGT1A1*1i IA; UGT1A1*1j IB; UGT1A1*1k IB; UGT1A1*6a; UGT1A1*6b; UGT1A1*6c; UGT1A1*6d; UGT1A1*28b; UGT1A1*28c; UGT1A1*28d; UGT1A1*36b; UGT1A1*37b; UGT1A1*364L IA; UGT1A1*533P IB; UGT1A1*60a; UGT1A1*60b; UGT1A1*60c; UGT1A1*I; UGT1A1*II; UGT1A1*III; UGT1A1*IV; UGT1A1*IX; UGT1A1*V; UGT1A1*VI; UGT1A1*VII; UGT1A1*VIII; UGT1A1*X
PharmGKB Accession Id: PA420

Details

Cytogenetic Location: chr2 : q37.1 - q37.1
GP mRNA Boundary: chr2 : 234668919 - 234681945
GP Gene Boundary: chr2 : 234658919 - 234684945
Strand: plus
Product Name: UDP glucuronosyltransferase 1A1, UDP glycosyltransferase 1 family, polypeptide A1, UDP glycosyltransferase 1 family, polypeptide A1 precursor, bilirubin UDP-glucuronosyltransferase 1-1, bilirubin UDP-glucuronosyltransferase isozyme 1
The mRNA boundaries are calculated using the gene's default feature set from NCBI, mapped onto the UCSC Golden Path. PharmGKB sets gene boundaries by expanding the mRNA boundaries by no less than 10,000 bases upstream (5') and 3,000 bases downstream (3') to allow for potential regulatory regions.

All alleles are displayed on the positive chromosomal strand.

Download Haplotype Data (CSV)

Haplotype rs10929302 rs13404099 rs34946978 rs35350960 rs4124874 rs4148323 rs8175347 rs873478 rs887829
UGT1A1*1L IA G C C C T G 6 G C
UGT1A1*1a G C C C T G 6 G C
UGT1A1*1a IA G C C C T G 6 G C
UGT1A1*1a WILDTYPE G C C C G 6 G C
UGT1A1*1b G C C C T G 6 G C
UGT1A1*1b IB G C C C T G 6 G C
UGT1A1*1c IB G C C C T G 6 G C
UGT1A1*1d IA G C C C T G 6 G C
UGT1A1*1e IA G C C C T G 6 G C
UGT1A1*1f IA G C C C T G 6 G C
UGT1A1*1g IA G C C C T G 6 G C
UGT1A1*1h IA G C C C T G 6 G C
UGT1A1*1i IA G C C C T G 6 G C
UGT1A1*1j IB G C C C T G 6 G C
UGT1A1*1k IB G C C C T G 6 G C
UGT1A1*6a G C C C T A 6 G C
UGT1A1*6b G C C C T A 6 G C
UGT1A1*6c G C C C T A 6 G C
UGT1A1*6d G C C C G A 6 G C
UGT1A1*28b A C C C G G 7 G T
UGT1A1*28c A C C A G G 7 G T
UGT1A1*28d G C C C T G 7 G T
UGT1A1*36b G C C C G G 5 G C
UGT1A1*37b G C C C G G 8 G C
UGT1A1*364L IA G C T C T G 6 G C
UGT1A1*533P IB G C C C T G 6 G C
UGT1A1*60a G C C C G G 6 G C
UGT1A1*60b G C C C G G 6 C C
UGT1A1*60c G G C C G G 6 C C
UGT1A1*I G C C C T G 6 G C
UGT1A1*II G C C C G G 6 G C
UGT1A1*III G C C C G G 6 G C
UGT1A1*IV G C C C G G 6 G C
UGT1A1*IX G C C C G G 8 G C
UGT1A1*V A C C C G G 6 G C
UGT1A1*VI A C C C G G 7 G C
UGT1A1*VII G C C C G G 7 G C
UGT1A1*VIII A G C C G G 7 G C
UGT1A1*X G C C C G G 5 G C

PharmGKB Curated Pathways

Pathways created internally by PharmGKB based primarily on literature evidence.

  1. Atorvastatin/Lovastatin/Simvastatin Pathway, Pharmacokinetics
    Drug-specific representation of the candidate genes involved in transport, metabolism and clearance.
  1. Codeine and Morphine Pathway, Pharmacokinetics
    Representation of the candidate genes involved in metabolism of codeine and morphine.
  1. Erlotinib Pathway, Pharmacokinetics
    Model human liver cell showing genes involved in the transportation and metabolism of Erlotinib.
  1. Estrogen Metabolism Pathway
    Estrogen metabolism in the liver.
  1. Etoposide Pathway
    Etoposide cellular disposition and effects.
  1. Fluvastatin Pathway, Pharmacokinetics
    Drug-specific representation of the candidate genes involved in transport, metabolism and clearance.
  1. Irinotecan Pathway, Pharmacodynamics
    Model non-tissue specific cancer cell displaying genes which may be involved in the irinotecan pathway.
  1. Irinotecan Pathway, Pharmacokinetics
    Model human liver cell showing blood, bile and intestinal compartments, indicating tissue specific involvement of genes in the irinotecan pathway.
  1. Losartan Pathway, Pharmacokinetics
    Representation of the candidate genes involved in the metabolism of losartan.
  1. Phenytoin Pathway, Pharmacokinetics
    Genes involved in the metabolism of phenytoin in the human liver cell.
  1. Statin Pathway - Generalized, Pharmacokinetics
    Representation of the superset of all genes involved in the transport, metabolism and clearance of statin class drugs.

External Pathways

Links to non-PharmGKB pathways.

PharmGKB contains no links to external pathways for this gene. To report a pathway, click here.

Curated Information ?

Gene Relationship Evidence
NR1I2
  •   
  •   
Publications
NR1I3
  •   
  •   
Publications
NR3C1
  •   
  •   
Publications

Non-Curated Information ?

A list of non-curated publications that mention this gene along with other genes is available.

Curated Information ?

Drug Class Relationship Evidence
artemisinin and derivatives
  • PD
  • PK
Publications
estrogens
  • PD
  •   
Publications
farnesyltransferase inhibitors
  •   
  • PK
Publications
Platinum compounds
  • PD
  • PK
Publications
xenobiotics
  • PD
  •   
Publications
Drug Relationship Evidence
4-methylumbelliferone
  •   
  • PK
Publications
acetaminophen
  •   
  • PK
Publications
asparaginase
  • PD
  • PK
Publications
atazanavir
  •   
  •   
Publications
atorvastatin
  •   
  • PK
Publications
bevacizumab
  • PD
  •   
Publications
buprenorphine
  •   
  • PK
Publications
bupropion
  • PD
  • PK
Publications
capecitabine
  • PD
  •   
Publications
carbamazepine
  • PD
  • PK
Publications
carboplatin
  •   
  •   
Publications
cefixime
  • PD
  • PK
Publications
cisplatin
  •   
  •   
Publications
codeine
  •   
  • PK
Publications
conjugated estrogens
  • PD
  •   
Publications
cyclophosphamide
  • PD
  • PK
Publications
cytarabine
  • PD
  • PK
Publications
daunorubicin
  • PD
  • PK
Publications
dexamethasone
  • PD
  • PK
Publications
efavirenz
  • PD
  • PK
Publications
erlotinib
  •   
  •   
Publications
estradiol
  •   
  • PK
Publications
ethinyl estradiol
  •   
  • PK
Publications
etoposide
  • PD
  • PK
Publications
ezetimibe
  • PD
  • PK
Publications
flavopiridol
  •   
  • PK
Publications
floxuridine
  •   
  •   
Publications
fluconazole
  •   
  • PK
Publications
flunitrazepam
  •   
  • PK
Publications
fluorouracil
  • PD
  • PK
Publications
flurbiprofen
  •   
  • PK
Publications
furosemide
  •   
  • PK
Publications
gefitinib
  •   
  •   
Publications
ibuprofen
  •   
  • PK
Publications
indinavir
  •   
  • PK
Publications
irinotecan
  • PD
  • PK
Publications, Variants
ketoconazole
  •   
  • PK
Publications
ketoprofen
  •   
  • PK
Publications
leucovorin
  • PD
  • PK
Publications
levothyroxine
  •   
  • PK
Publications
lopinavir
  •   
  •   
Publications
losartan
  •   
  • PK
Publications
mephenytoin
  • PD
  • PK
Publications
mercaptopurine
  • PD
  • PK
Publications
methotrexate
  • PD
  • PK
Publications
miconazole
  •   
  •   
Publications
midazolam
  • PD
  • PK
Publications
morphine
  •   
  • PK
Publications
naphthol
  •   
  • PK
Publications
nevirapine
  • PD
  • PK
Publications
nicotine
  •   
  •   
Publications
Nilotinib
  •   
  • PK
Publications
omeprazole
  • PD
  •   
Publications
oxaliplatin
  • PD
  • PK
Publications
pazopanib
  • PD
  •   
Publications
phenobarbital
  • PD
  • PK
Publications
phenytoin
  • PD
  • PK
Publications
prednisone
  • PD
  • PK
Publications
Raltegravir
  •   
  • PK
Publications
rifampin
  • PD
  • PK
Publications
ritonavir
  •   
  •   
Publications
SN-38
  • PD
  • PK
Publications, Variants
telmisartan
  •   
  • PK
Publications
temozolomide
  • PD
  • PK
Publications
testosterone
  •   
  •   
Publications
Tipifarnib
  •   
  • PK
Publications, Variants
tranilast
  •   
  • PK
Publications
vincristine
  • PD
  • PK
Publications

Non-Curated Information ?

A list of non-curated publications that mention this gene along with other drugs is available.

Curated Information ?

Disease Relationship Evidence
Adenocarcinoma
  •   
  •   
Publications
Brain Neoplasms
  •   
  •   
Publications
Breast Neoplasms
  • PD
  •   
Publications
cancer or viral infections
  •   
  •   
Publications
Carcinoma, Non-Small-Cell Lung
  •   
  •   
Publications
Colonic Neoplasms
  •   
  • PK
Publications
Colorectal Neoplasms
  • PD
  • PK
Publications
Coronary Artery Disease
  •   
  •   
Publications
Crigler-Najjar Syndrome
  • PD
  • PK
Publications
Diarrhea
  • PD
  • PK
Publications
Drug Toxicity
  • PD
  • PK
Publications, Variants
Endometrial Neoplasms
  • PD
  •   
Publications
Epilepsy
  •   
  •   
Publications
Esophogeal Neoplasms
  • PD
  •   
Publications
Gilbert's syndrome
  • PD
  • PK
Publications, Variants
Head and Neck Neoplasms
  • PD
  •   
Publications
HIV
  • PD
  • PK
Publications
Hodgkin Disease
  •   
  •   
Publications
Hyperbilirubinemia
  •   
  • PK
Publications, Variants
Hyperbilirubinemia, Hereditary
  • PD
  • PK
Publications
Leukemia
  •   
  •   
Publications
Leukemia, Myelogenous, Chronic, BCR-ABL Positive
  •   
  • PK
Publications
Leukemia, Myeloid
  •   
  • PK
Publications
Leukemia, Myeloid, Acute
  •   
  • PK
Publications
Lung Neoplasms
  •   
  • PK
Publications
Lymphoma
  •   
  •   
Publications
Melanoma
  •   
  •   
Publications
Neoplasms
  • PD
  • PK
Publications, Variants
Neuroblastoma
  • PD
  • PK
Publications
Neurotoxicity Syndromes
  •   
  •   
Publications
Neutropenia
  • PD
  • PK
Publications
Ovarian Neoplasms
  •   
  •   
Publications
Pain
  •   
  • PK
Publications
Precursor Cell Lymphoblastic Leukemia-Lymphoma
  • PD
  • PK
Publications
Prostatic Neoplasms
  •   
  •   
Publications
Rectal Neoplasms
  • PD
  •   
Publications
Sarcoma, Kaposi
  •   
  •   
Publications
Thrombocytopenia
  • PD
  • PK
Publications

Non-Curated Information ?

A list of non-curated publications that mention this gene along with other diseases is available.

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