Gene:
GATA3
GATA binding protein 3

PharmGKB contains no dosing guidelines for this . To report known genotype-based dosing guidelines, or if you are interested in developing guidelines, click here.

PharmGKB contains no drug labels with pharmacogenomic information for this . To report a drug label with PGx, click here.

Disclaimer: The PharmGKB's clinical annotations reflect expert consensus based on clinical evidence and peer-reviewed literature available at the time they are written and are intended only to assist clinicians in decision-making and to identify questions for further research. New evidence may have emerged since the time an annotation was submitted to the PharmGKB. The annotations are limited in scope and are not applicable to interventions or diseases that are not specifically identified.

The annotations do not account for individual variations among patients, and cannot be considered inclusive of all proper methods of care or exclusive of other treatments. It remains the responsibility of the health-care provider to determine the best course of treatment for a patient. Adherence to any guideline is voluntary, with the ultimate determination regarding its application to be made solely by the clinician and the patient. PharmGKB assumes no responsibility for any injury or damage to persons or property arising out of or related to any use of the PharmGKB clinical annotations, or for any errors or omissions.

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This is a non-comprehensive list of genetic tests with pharmacogenetics relevance, typically submitted by the manufacturer and manually curated by PharmGKB. The information listed is provided for educational purposes only and does not constitute an endorsement of any listed test or manufacturer.

A more complete listing of genetic tests is found at the Genetic Testing Registry (GTR).

PGx Test Variants Assayed Related Drugs?

Overview

Alternate Names:  None
Alternate Symbols:  HDR
PharmGKB Accession Id: PA28586

Details

Cytogenetic Location: chr10 : p14 - p14
GP mRNA Boundary: chr10 : 8096667 - 8117164
GP Gene Boundary: chr10 : 8086667 - 8120164
Strand: plus
The mRNA boundaries are calculated using the gene's default feature set from NCBI, mapped onto the UCSC Golden Path. PharmGKB sets gene boundaries by expanding the mRNA boundaries by no less than 10,000 bases upstream (5') and 3,000 bases downstream (3') to allow for potential regulatory regions.

PharmGKB Curated Pathways

Pathways created internally by PharmGKB based primarily on literature evidence.

PharmGKB contains no curated pathways for this gene. If you would like to volunteer to work on a pathway, please let us know.

External Pathways

Links to non-PharmGKB pathways.

  1. Calcineurin-regulated NFAT-dependent transcription in lymphocytes - (Pathway Interaction Database NCI-Nature Curated)
  2. gata3 participate in activating the th2 cytokine genes expression - (BioCarta via Pathway Interaction Database)
  3. IL27-mediated signaling events - (Pathway Interaction Database NCI-Nature Curated)
  4. Regulation of nuclear SMAD2/3 signaling - (Pathway Interaction Database NCI-Nature Curated)

Publications related to GATA3: 3

No Dosing Guideline available No Drug Label available No Clinical Annotation available No Variant Annotation available No VIP available No VIP available
ESR1 ligand-binding domain mutations in hormone-resistant breast cancer. Nature genetics. 2013. Toy Weiyi, et al. PubMed
No Dosing Guideline available No Drug Label available No Clinical Annotation available No Variant Annotation available No VIP available No VIP available
Inherited GATA3 variants are associated with Ph-like childhood acute lymphoblastic leukemia and risk of relapse. Nature genetics. 2013. Perez-Andreu Virginia, et al. PubMed
No Dosing Guideline available No Drug Label available No Clinical Annotation available No Variant Annotation available No VIP available No VIP available
Blood gene expression correlated with tic severity in medicated and unmedicated patients with Tourette Syndrome. Pharmacogenomics. 2010. Liao Isaac H, et al. PubMed

LinkOuts

Entrez Gene:
2625
OMIM:
131320
146255
UCSC Genome Browser:
NM_002051
RefSeq RNA:
NM_001002295
NM_002051
RefSeq Protein:
NP_001002295
NP_002042
RefSeq DNA:
AC_000053
AC_000142
NC_000010
NG_015859
NT_008705
NW_001837931
NW_924584
UniProtKB:
GATA3_HUMAN (P23771)
Ensembl:
ENSG00000107485
GenAtlas:
GATA3
GeneCard:
GATA3
MutDB:
GATA3
ALFRED:
LO037816Z
HuGE:
GATA3
Comparative Toxicogenomics Database:
2625
ModBase:
P23771
HumanCyc Gene:
HS03000
HGNC:
4172

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