- Clinical PGx
- PGx Research
- Overview
- VIP
- Haplotypes
- Pathways
- Is Related To
- Publications
- Downloads/LinkOuts
PharmGKB contains no dosing guidelines for this gene. To report known dosing guidelines, or if you are interested in developing guidelines, click here.
PharmGKB contains no drug labels with pharmacogenomic information for this gene. To report a drug label with PGx, click here.
PharmGKB contains no Clinical Variants that meet the highest level of criteria.
To see more Clinical Variants with lower levels of criteria, click the button at the bottom of the table.
| Position ? | Drug ? | Relevance ? |
Strength of Evidence ? |
||
|---|---|---|---|---|---|
Download a summary of all Clinical Annotations available.
Disclaimer: The PharmGKB's clinical annotations reflect expert consensus based on clinical evidence and peer-reviewed literature available at the time they are written and are intended only to assist clinicians in decision-making and to identify questions for further research. New evidence may have emerged since the time an annotation was submitted to the PharmGKB. The annotations are limited in scope and are not applicable to interventions or diseases that are not specifically identified.
The annotations do not account for individual variations among patients, and cannot be considered inclusive of all proper methods of care or exclusive of other treatments. It remains the responsibility of the health-care provider to determine the best course of treatment for a patient. Adherence to any guideline is voluntary, with the ultimate determination regarding its application to be made solely by the clinician and the patient. PharmGKB assumes no responsibility for any injury or damage to persons or property arising out of or related to any use of the PharmGKB clinical annotations, or for any errors or omissions.
PharmGKB contains no genetic tests for this gene. To report genetic tests, click here.
The table below contains information about pharmacogenomic variants on PharmGKB. Please follow the link in the "Variant" column for more information about a particular variant. Each link in the "Variant" column leads to the corresponding PharmGKB Variant Page. The Variant Page contains summary data, including PharmGKB manually curated information about variant-drug pairs based on individual PubMed publications. The PMIDs for these PubMed publications can be found on the Variant Page.
The tags in the first column of the table indicate what type of information can be found on the corresponding Variant Page.
Links in the "Drugs" column lead to PharmGKB Drug Pages.
|
Variant?
(build 132) |
Alternate Names ? | Drugs ? |
Alleles
?
(+ chr strand) |
Function ? |
Amino Acid?
Translation |
|
|---|---|---|---|---|---|---|
| rs12654264 | c.1368+1176A>T, g.20611A>T, g.25242962A>T, noncoding SNP located in intron 12 of HMGCR IVS 12 |
A > T
|
Not Available | |||
| rs17238540 | HMGCR:SNP 29, c.2298+117T>G, c.2457+117T>G, g.25249857T>G, g.27506T>G |
T > G
T > A
T > C
|
Not Available | |||
| rs17244841 | HMGCR:SNP 12, c.451-174A>T, g.14863A>T, g.25237214A>T |
A > T
|
Not Available | |||
| rs3846662 | c.1564-106A>G, c.1722+45A>G, g.23092A>G, g.25245443A>G |
A > T
A > C
A > G
|
Not Available |
Overview
| Alternate Names: | 3-hydroxy-3-methylglutaryl CoA reductase (NADPH); 3-hydroxy-3-methylglutaryl-Coenzyme A reductase; HMG-CoA reductase; OTTHUMP00000222062; hydroxymethylglutaryl-CoA reductase |
|---|---|
| Alternate Symbols: | LDLCQ3 |
| Haplotypes: | HMGCR H2; HMGCR H7 |
| PharmGKB Accession Id: | PA189 |
Details
| Cytogenetic Location: | chr5 : q13.3 - q13.3 |
|---|---|
| GP mRNA Boundary†: | chr5 : 74632993 - 74657926 |
| GP Gene Boundary†: | chr5 : 74622993 - 74660926 |
| Strand: | plus |
| Product Name: | No data available |
All alleles are displayed on the positive chromosomal strand.
| Haplotype | rs10038095 | rs17238484 | rs17238540 | rs17244841 | rs3761738 | rs3761739 | rs3846662 | rs3846663 | rs4629571 | rs4704209 | rs6453131 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| HMGCR H2 | A | G | T | A | C | C | G | C | A | A | G |
| HMGCR H7 | A | G | G | T | C | C | G | C | A | A | G |
PharmGKB Curated Pathways
Pathways created internally by PharmGKB based primarily on literature evidence.
-
Bisphosphonate Pathway, Pharmacodynamics
Representation of genes involved in bisphosphonates' effects in osteoclasts.
-
Statin Pathway, Pharmacodynamics
Genes involved in mediating statin effects on hepatic cholesterol metabolism and consequent effects on plasma lipoprotein transport.
External Pathways
Links to non-PharmGKB pathways.
PharmGKB contains no links to external pathways for this gene. To report a pathway, click here.
Curated Information ?
| Evidence | Drug |
|---|---|
| atorvastatin | |
| cerivastatin | |
| fluvastatin | |
| lovastatin | |
| pravastatin | |
| rosuvastatin | |
| simvastatin |
| Evidence | Drug Class |
|---|---|
| hmg coa reductase inhibitors |
Curated Information ?
| Evidence | Disease |
|---|---|
| Cardiovascular Diseases | |
| Colonic Neoplasms | |
| Diabetes Mellitus | |
| Vascular Diseases |
Publications related to HMGCR: 26
LinkOuts
- Entrez Gene:
- 3156
- OMIM:
- 142910
- UCSC Genome Browser:
- NM_000859
- RefSeq RNA:
- NM_000859
- NM_001130996
- RefSeq Protein:
- NP_000850
- NP_001124468
- RefSeq DNA:
- AC_000048
- AC_000137
- NC_000005
- NG_011449
- NT_006713
- NW_001838951
- NW_922729
- UniProtKB:
- HMDH_HUMAN (P04035)
- Ensembl:
- ENSG00000113161
- GenAtlas:
- HMGCR
- GeneCard:
- GC05P074668 (3156)
- MutDB:
- HMGCR
- ALFRED:
- LO069456E